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2004年5月13日《Nature》内容提要

  • 恒星的生长是无限的
    本期封面所示为我们银河系中恒星形成最活跃的区域之一,在“人马座”的“欧米加”星云中。新的观测工作为我们提供了一个大质量恒星形成时的图像。这些图像显示了一个巨大的恒星,其大小相当于20个太阳质量,但仍在生长,是从一个很大的、转动的增长盘诞生的。这一发现解决了一个长期存在的争议。像太阳这样的低质量恒星,被认为是由来自由一个分子星云的引力坍缩形成的一个核周围的星际介质的物质的增长形成的,但一些理论工作者将由这一机制能够形成的恒星的极限确定为10个太阳质量。现在看来,恒星形成的生长机制似乎是无限的---在这一新的例子中,一个至少有100个太阳质量的气体库可提供该恒星进一步生长所需的物质。
  • The formation of a massive protostar through the disk accretion of gas
  • The formation of low-mass stars like our Sun can be explained by the gravitational collapse of a molecular cloud fragment into a protostellar core and the subsequent accretion of gas and dust from the surrounding interstellar medium. Theoretical considerations suggest that the radiation pressure from the protostar on the in-falling material may prevent the formation of stars above ten solar masses through this mechanism, although some calculations have claimed that stars up to 40 solar masses can in principle be formed via accretion through a disk. Given this uncertainty and the fact that most massive stars are born in dense clusters, it was suggested that high-mass stars are the result of the runaway merging of intermediate-mass stars. Here we report observations that clearly show a massive star being born from a large rotating accretion disk. The protostar has already assembled about 20 solar masses, and the accretion process is still going on. The gas reservoir of the circumstellar disk contains at least 100 solar masses of additional gas, providing sufficient fuel for substantial further growth of the forming star.

 

  • 关于衰老过程的研究
    酵母细胞、线虫、细胞培养物和啮齿动物都在以它们各自不同的方式在世界各地的实验室中静静地衰老,使我们能够有机会研究我们都会经历的一个过程---变老。但我们能够真的希望从对这些相差迥异的生物的研究中形成一个关于衰老过程的统一画面吗?

 

  • 能够克服衍射极限的光子纠缠方法
    电磁波之间经典的干涉图案受到衍射极限的限制,意思是说,由光形成的任何图案不可能有小于半个波长的尺寸。但光子纠缠(一种量子现象,当两个或更多光子共享独特性质、但在物理上却是彼此分开的时候出现)可提供一种克服该极限的方式。研究人员已经用光子对证明了这一点,但事实证明,要制造更高层次干涉所需的多粒子纠缠态却是困难的。现在,两个研究小组独立设计出了用三光子和四光子态克服衍射极限的实验方案。两个方案都能按比例放大到更多光子数量,这对在高分辨率测量和成像中的纠缠增强应用尤其有意义。
  • De Broglie wavelength of a non-local four-photon state
  • Superposition is one of the most distinctive features of quantum theory and has been demonstrated in numerous single-particle interference experiments. Quantum entanglement, the coherent superposition of states in multi-particle systems, yields more complex phenomena. One important type of multi-particle experiment uses path-entangled number states, which exhibit pure higher-order interference and the potential for applications in metrology and imaging; these include quantum interferometry and spectroscopy with phase sensitivity at the Heisenberg limit, or quantum lithography beyond the classical diffraction limit. It has been generally understood that in optical implementations of such schemes, lower-order interference effects always decrease the overall performance at higher particle numbers. Such experiments have therefore been limited to two photons. Here we overcome this limitation, demonstrating a four-photon interferometer based on linear optics. We observe interference fringes with a periodicity of one-quarter of the single-photon wavelength, confirming the presence of a four-particle mode-entangled state. We anticipate that this scheme should be extendable to arbitrary photon numbers, holding promise for realizable applications with entanglement-enhanced performance.

 

  • 对Eemian间冰期的重新认识
    “北极涛动/北大西洋涛动”(AO/NAO),是在温室变暖、北大西洋深水形成和长期天气预报的改进问题等方面广泛讨论的大气变化的一个天然来源。现在,将从来自红海的每年积累的珊瑚化石所得到的关于过去气候情况的信息与气候模型模拟相结合所做的一项研究表明,AO/NAO在距今约12.5万年前也是很重要的。这一时间间隔(被称为“Eemian间冰期”)被认为是比较温暖的,但新的化石记录却描绘了一幅更复杂的画面:这个时期对欧洲来说是一个暖冬,但对中东来说冬天却比今天冷。
  • Increased seasonality in Middle East temperatures during the last interglacial period
  • The last interglacial period (about 125,000 years ago) is thought to have been at least as warm as the present climate. Owing to changes in the Earth's orbit around the Sun, it is thought that insolation in the Northern Hemisphere varied more strongly than today on seasonal timescales, which would have led to corresponding changes in the seasonal temperature cycle. Here we present seasonally resolved proxy records using corals from the northernmost Red Sea, which record climate during the last interglacial period, the late Holocene epoch and the present. We find an increased seasonality in the temperature recorded in the last interglacial coral. Today, climate in the northern Red Sea is sensitive to the North Atlantic Oscillation, a climate oscillation that strongly influences winter temperatures and precipitation in the North Atlantic region. From our coral records and simulations with a coupled atmosphere–ocean circulation model, we conclude that a tendency towards the high-index state of the North Atlantic Oscillation during the last interglacial period, which is consistent with European proxy records, contributed to the larger amplitude of the seasonal cycle in the Middle East.

 

  • 关于地球“发电机”运转所需能量的新计算结果
    地球的磁场是由在液体外核中发生的一个“发电”过程产生的。现在,一项将来自对该“发电机”的数值模拟和实验室模拟的结果相结合所做的新的计算工作,得出了保持该“发电机”运转所需的能量,其结果在最近所做估计的低端。因此,地核的强烈放射性加热似乎并不需要,而固体内核(目前仍在随时间增长)在地球历史上存在的时间可能要比以前所怀疑的长得多。
  • Power requirement of the geodynamo from ohmic losses in numerical and laboratory dynamos
  • In the Earth's fluid outer core, a dynamo process converts thermal and gravitational energy into magnetic energy. The power needed to sustain the geomagnetic field is set by the ohmic losses (dissipation due to electrical resistance). Recent estimates of ohmic losses cover a wide range, from 0.1 to 3.5 TW, or roughly 0.3–10% of the Earth's surface heat flow. The energy requirement of the dynamo puts constraints on the thermal budget and evolution of the core through Earth's history. Here we use a set of numerical dynamo models to derive scaling relations between the core's characteristic dissipation time and the core's magnetic and hydrodynamic Reynolds numbers—dimensionless numbers that measure the ratio of advective transport to magnetic and viscous diffusion, respectively. The ohmic dissipation of the Karlsruhe dynamo experiment supports a simple dependence on the magnetic Reynolds number alone, indicating that flow turbulence in the experiment and in the Earth's core has little influence on its characteristic dissipation time. We use these results to predict moderate ohmic dissipation in the range of 0.2–0.5 TW, which removes the need for strong radioactive heating in the core and allows the age of the solid inner core to exceed 2.5 billion years.

 

  • 海洋浮游植物的营养需求
    地球上约一半的光合作用是由浮游植物进行的。要了解它们的生长和丰度,我们需要知道它们的营养需求,特别是对有潜在限制作用的营养物质氮和磷的需求。海洋学家早就将浮游植物所要求的氮和磷的组成比例当成常数来对待,该常数即所谓的 Redfield比,其数值为16:1。但是什么决定浮游植物的氮:磷比例要求的呢?现在,将浮游植物生理和资源竞争考虑进去的数学模型表明,Redfield比从内在讲并没有什么最优化可言。相反,它是一个与具体物种有关的氮:磷比例的平均值,这些比例的值在8.2和45之间变化,取决于生态条件。鉴于海洋中氮:磷比例要求的可变性,与传统的Redfield比模型相比,今后的模型将需要考虑更多的可变性,才能准确反映实际情况。
  • Optimal nitrogen-to-phosphorus stoichiometry of phytoplankton
  • Redfield noted the similarity between the average nitrogen-to-phosphorus ratio in plankton (N:P = 16 by atoms) and in deep oceanic waters (N:P = 15; refs 1, 2). He argued that this was neither a coincidence, nor the result of the plankton adapting to the oceanic stoichiometry, but rather that phytoplankton adjust the N:P stoichiometry of the ocean to meet their requirements through nitrogen fixation, an idea supported by recent modelling studies. But what determines the N:P requirements of phytoplankton? Here we use a stoichiometrically explicit model of phytoplankton physiology and resource competition to derive from first principles the optimal phytoplankton stoichiometry under diverse ecological scenarios. Competitive equilibrium favours greater allocation to P-poor resource-acquisition machinery and therefore a higher N:P ratio; exponential growth favours greater allocation to P-rich assembly machinery and therefore a lower N:P ratio. P-limited environments favour slightly less allocation to assembly than N-limited or light-limited environments. The model predicts that optimal N:P ratios will vary from 8.2 to 45.0, depending on the ecological conditions. Our results show that the canonical Redfield N:P ratio of 16 is not a universal biochemical optimum, but instead represents an average of species-specific N:P ratios.

 

  • 物种灭绝中的连环效应
    人类的行为正在通过污染、土地利用的变化和其他形式的生境破坏引起植物和动物物种的灭绝。然而,如果一旦“最弱”的物种灭绝后剩余的物种对环境退化的抵抗力会变得更强时,事情也许不会这么糟。但实际情况似乎并不是这样。Ives和 Cardinale用分析一个生态系统中物种间相互作用网络的数学模型表明,当其他物种灭绝时,一种有抵抗力的物种会突然对环境退化变得敏感起来。由于这种无法预测的灭绝效应,生态系统即使在丢失最脆弱的物种后可能会仍然保持不稳定。
  • Food-web interactions govern the resistance of communities after non-random extinctions
  • Growing concern about how loss of biodiversity will affect ecosystems has stimulated numerous studies. Although most studies have assumed that species go extinct randomly, species often go extinct in order of their sensitivity to a stress that intensifies through time (such as climate change). Here we show that the consequences of random and ordered extinctions differ. Both depend on food-web interactions that create compensation; that is, the increase of some species when their competitors and/or predators decrease in density due to environmental stress. Compensation makes communities as a whole more resistant to stress by reducing changes in combined species densities. As extinctions progress, the potential for compensation is depleted, and communities become progressively less resistant. For ordered extinctions, however, this depletion is offset and communities retain their resistance, because the surviving species have greater average resistance to the stress. Despite extinctions being ordered, changes in the food web with successive extinctions make it difficult to predict which species will show compensation in the future. This unpredictability argues for 'whole-ecosystem' approaches to biodiversity conservation, as seemingly insignificant species may become important after other species go extinct.

 

  • 候鸟依靠什么辨别方向
    关于候鸟是怎样利用地球的磁场辨别方向的有两种不同的解释:一种解释涉及基于由生物产生的铁磁颗粒的受体;另一种解释是一种基于一个磁敏感化学反应的“光化学罗盘”。高频振荡磁场不会影响一个用永磁材料做成的罗盘,但会通过磁共振效应干扰一个基于光化学反应的罗盘。所以,鸟类在一个共振磁场中的行为,是区分两种理论解释的一个很好的诊断性测试。在一个实验中,研究人员让知更鸟处于这样一个磁场中;当该磁场为垂直方向时,这些知更鸟会失去方向感。该效应取决于所施加的磁场与地磁场之间的角度,这与基于自由基对生物化学反应的传感器中的“singlet-triplet转变”所受到的一种共振效应是一致的。
  • Resonance effects indicate a radical-pair mechanism for avian magnetic compass
  • Migratory birds are known to use the geomagnetic field as a source of compass information. There are two competing hypotheses for the primary process underlying the avian magnetic compass, one involving magnetite, the other a magnetically sensitive chemical reaction. Here we show that oscillating magnetic fields disrupt the magnetic orientation behaviour of migratory birds. Robins were disoriented when exposed to a vertically aligned broadband (0.1–10 MHz) or a single-frequency (7-MHz) field in addition to the geomagnetic field. Moreover, in the 7-MHz oscillating field, this effect depended on the angle between the oscillating and the geomagnetic fields. The birds exhibited seasonally appropriate migratory orientation when the oscillating field was parallel to the geomagnetic field, but were disoriented when it was presented at a 24° or 48° angle. These results are consistent with a resonance effect on singlet–triplet transitions and suggest a magnetic compass based on a radical-pair mechanism.

 

  • 应对天花病毒爆发的策略
    怎样最好地应对生物恐怖分子的袭击?对这个问题所做的评估在天花的接种免疫方面得出了不同的结果。普遍接种免疫是否至关重要?对处于危险中的人们进行有目标的接种免疫是否可取得同样效果?一个经过精心设计的新的模拟实验表明,如果恐怖分子所施放的天花病毒能被马上检测出来,如果人们能很快撤退到自己家里,那么有目标地接种免疫在城市中是可以起到有效作用的。这项工作涉及到EpiSIMS 流行病学模拟体系,这是由“洛斯阿拉莫斯国家实验室”开发出的TRANSIMS体系所派生出的一个体系。TRANSIMS体系模拟区域交通动态,可应用于社会网络中,因为限制人们去哪里、什么时候去的正是交通基础设施。
  • Modelling disease outbreaks in realistic urban social networks
  • Most mathematical models for the spread of disease use differential equations based on uniform mixing assumptions or ad hoc models for the contact process. Here we explore the use of dynamic bipartite graphs to model the physical contact patterns that result from movements of individuals between specific locations. The graphs are generated by large-scale individual-based urban traffic simulations built on actual census, land-use and population-mobility data. We find that the contact network among people is a strongly connected small-world-like graph with a well-defined scale for the degree distribution. However, the locations graph is scale-free, which allows highly efficient outbreak detection by placing sensors in the hubs of the locations network. Within this large-scale simulation framework, we then analyse the relative merits of several proposed mitigation strategies for smallpox spread. Our results suggest that outbreaks can be contained by a strategy of targeted vaccination combined with early detection without resorting to mass vaccination of a population.

 

  • 关闭的Aquaporin水孔的电子晶体结构
    Aquaporin是很多植物和动物组织中的水通道,在那里,它们在跨膜水运动中起重要作用。Aquaporin-0是哺乳动物眼睛中晶状体纤维间隙连接点的主要成分,是已知在试管中形成膜连接点的唯一Aquaporin。Gonen等人利用这一事实,获得了一个关闭的Aquaporin水孔的第一个电子晶体结构。通过与已经确定的开放孔的结构进行比较,研究人员发现了当Aquaporin与膜形成一个连接点时水孔被关闭的一个机制。
  • Aquaporin-0 membrane junctions reveal the structure of a closed water pore
  • The lens-specific water pore aquaporin-0 (AQP0) is the only aquaporin known to form membrane junctions in vivo. We show here that AQP0 from the lens core, containing some carboxy-terminally cleaved AQP0, forms double-layered crystals that recapitulate in vivo junctions. We present the structure of the AQP0 membrane junction as determined by electron crystallography. The junction is formed by three localized interactions between AQP0 molecules in adjoining membranes, mainly mediated by proline residues conserved in AQP0s from different species but not present in most other aquaporins. Whereas all previously determined aquaporin structures show the pore in an open conformation, the water pore is closed in AQP0 junctions. The water pathway in AQP0 also contains an additional pore constriction, not seen in other known aquaporin structures, which may be responsible for pore gating.

 

  • 对HDV病毒及其RNA分解反应的研究
    人类丁肝病毒(HDV)是乙肝病毒的一个单链RNA“卫星”。在病毒感染所需的一个重要反应中,HDV病毒RNA起一个核糖酶的作用,使其RNA磷酸二酯骨干自我分解。对分解前和分解后HDV核糖酶的晶体结构所做的一个比较表明,分解后发生了一个明显的构象变化。因此,一个对催化反应来说非常关键的金属离子被从活性点上剔除出来,从而使得该核糖酶不能催化逆向的反应,不能将RNA骨干再次连接起来。 RNA催化反应的普遍机制并不是很清楚,但现在可以在相当深的层次上对这一反应进行研究。
  • A conformational switch controls hepatitis delta virus ribozyme catalysis
  • Ribozymes enhance chemical reaction rates using many of the same catalytic strategies as protein enzymes. In the hepatitis delta virus (HDV) ribozyme, site-specific self-cleavage of the viral RNA phosphodiester backbone requires both divalent cations and a cytidine nucleotide. General acid–base catalysis, substrate destabilization and global and local conformational changes have all been proposed to contribute to the ribozyme catalytic mechanism. Here we report ten crystal structures of the HDV ribozyme in its pre-cleaved state, showing that cytidine is positioned to activate the 2'-OH nucleophile in the precursor structure. This observation supports its proposed role as a general base in the reaction mechanism. Comparison of crystal structures of the ribozyme in the pre- and post-cleavage states reveals a significant conformational change in the RNA after cleavage and that a catalytically critical divalent metal ion from the active site is ejected. The HDV ribozyme has remarkable chemical similarity to protein ribonucleases and to zymogens for which conformational dynamics are integral to biological activity. This finding implies that RNA structural rearrangements control the reactivity of ribozymes and ribonucleoprotein enzymes.
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